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fix: use context manager for file operations in cardiology_detect.py (Fixes #1171) #1172

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fix: use context manager for file operations in cardiology_detect.py (Fixes #1171) #1172

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15 changes: 10 additions & 5 deletions pyhealth/tasks/cardiology_detect.py
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Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,8 @@ def cardiology_isAR_fn(record, epoch_sec=10, shift=5):

# X load
X = loadmat(os.path.join(root, signal))["val"]
label_content = open(os.path.join(root, label), "r").readlines()
with open(os.path.join(root, label), "r") as f:
label_content = f.readlines()
Dx, Sex, Age = label_content[-4].split(" ")[-1][:-1].split(","), \
label_content[-5].split(" ")[-1][:-1].split(","), \
label_content[-6].split(" ")[-1][:-1].split(",")
Expand Down Expand Up @@ -169,7 +170,8 @@ def cardiology_isBBBFB_fn(record, epoch_sec=10, shift=5):

# X load
X = loadmat(os.path.join(root, signal))["val"]
label_content = open(os.path.join(root, label), "r").readlines()
with open(os.path.join(root, label), "r") as f:
label_content = f.readlines()
Dx, Sex, Age = label_content[-4].split(" ")[-1][:-1].split(","), label_content[-5].split(" ")[-1][:-1].split(","), label_content[-6].split(" ")[-1][:-1].split(",")

y = 1 if set(Dx).intersection(BBBFB_space) else 0
Expand Down Expand Up @@ -263,7 +265,8 @@ def cardiology_isAD_fn(record, epoch_sec=10, shift=5):

# X load
X = loadmat(os.path.join(root, signal))["val"]
label_content = open(os.path.join(root, label), "r").readlines()
with open(os.path.join(root, label), "r") as f:
label_content = f.readlines()
Dx, Sex, Age = label_content[-4].split(" ")[-1][:-1].split(","), label_content[-5].split(" ")[-1][:-1].split(","), label_content[-6].split(" ")[-1][:-1].split(",")

y = 1 if set(Dx).intersection(AD_space) else 0
Expand Down Expand Up @@ -357,7 +360,8 @@ def cardiology_isCD_fn(record, epoch_sec=10, shift=5):

# X load
X = loadmat(os.path.join(root, signal))["val"]
label_content = open(os.path.join(root, label), "r").readlines()
with open(os.path.join(root, label), "r") as f:
label_content = f.readlines()
Dx, Sex, Age = label_content[-4].split(" ")[-1][:-1].split(","), label_content[-5].split(" ")[-1][:-1].split(","), label_content[-6].split(" ")[-1][:-1].split(",")

y = 1 if set(Dx).intersection(CD_space) else 0
Expand Down Expand Up @@ -451,7 +455,8 @@ def cardiology_isWA_fn(record, epoch_sec=10, shift=5):

# X load
X = loadmat(os.path.join(root, signal))["val"]
label_content = open(os.path.join(root, label), "r").readlines()
with open(os.path.join(root, label), "r") as f:
label_content = f.readlines()
Dx, Sex, Age = label_content[-4].split(" ")[-1][:-1].split(","), label_content[-5].split(" ")[-1][:-1].split(","), label_content[-6].split(" ")[-1][:-1].split(",")


Expand Down