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Pull requests: nf-core/modules

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Pull requests list

Update to topics getorganelle/*
#11561 opened May 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
2
PROOF OF CONCEPT: samtools/multicommand
#11550 opened May 7, 2026 by prototaxites Contributor • Draft
17 tasks
9
Add the finaletoolkit/delfi module
#11547 opened May 7, 2026 by lbeltrame Contributor Loading…
11 of 17 tasks
@lbeltrame
Add fgumi/extract
#11546 opened May 6, 2026 by atrigila Contributor • Draft
5
Disable implicit parallelism in variancepartition/dream
#11545 opened May 6, 2026 by delfiterradas Contributor • Draft
17 tasks
1
@delfiterradas
1
New Module: Octopusv/correct
#11540 opened May 6, 2026 by manascripts Member Loading…
12 of 13 tasks
1
Remove fai index from bowtie2 modules
#11537 opened May 5, 2026 by Kevin-Brockers Contributor Loading…
5 of 6 tasks
New module: sdrfpipelines/convertmhcquant
#11514 opened May 4, 2026 by jonasscheid Contributor Loading…
12 of 14 tasks
10
Add module to fetch SDRF files from PRIDE Archive
#11513 opened May 4, 2026 by jonasscheid Contributor Loading…
14 tasks done
9
feat(spikeinterface/sort): add module wrapping SpikeInterface 0.101.2 spike sorting
#11464 opened May 3, 2026 by olaflaitinen Member • Draft
8 of 12 tasks
Update gamma/gamma to using the versions topic channel size/s
#11462 opened May 1, 2026 by mribeirodantas Member Loading…
14 of 17 tasks
1
@mribeirodantas
1
nf-core-module-dev bots updating hmmer tools: hmmbuild, hmmsearch, hmmalign to topic versions and latest standards size/m
#11458 opened May 1, 2026 by vagkaratzas Contributor Loading…
9 of 17 tasks
1
feat: allow bwa-mem to output sam format
#11457 opened May 1, 2026 by piplus2 Contributor Loading…
7 of 17 tasks
1
16
Update whamg: topic versions, stub block, sanitizeOutput
#11450 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Update wfmash: topic versions, stub block, sanitizeOutput
#11449 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update smoothxg: topic versions, stub block, sanitizeOutput
#11448 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
4
Update seqsero2: topic versions, stub block, sanitizeOutput
#11446 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update salsa2: topic versions, stub block, sanitizeOutput
#11445 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
2
Update mygene: topic versions, stub block, sanitizeOutput
#11441 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Add stub block and migrate plasmidid to topic channels
#11438 opened Apr 30, 2026 by HReed1 Contributor Loading…
7
Add stub block and migrate pairix to topic channels
#11437 opened Apr 30, 2026 by HReed1 Contributor Loading…
2
fix(kofamscan): migrate to topic versions and add stub testing
#11436 opened Apr 30, 2026 by HReed1 Contributor Loading…
8 tasks done
2
feat(islandpath): migrate to topic: versions tuple
#11435 opened Apr 30, 2026 by HReed1 Contributor Loading…
8
feat(maltextract): add stub block and migrate to topic channel versions
#11419 opened Apr 29, 2026 by HReed1 Contributor Loading…
4
feat(hicap): migrate to topic channel versions (stub block already present)
#11416 opened Apr 29, 2026 by HReed1 Contributor Loading…
3
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