feat(hicap): migrate to topic channel versions (stub block already present)#11416
Open
HReed1 wants to merge 3 commits into
Open
feat(hicap): migrate to topic channel versions (stub block already present)#11416HReed1 wants to merge 3 commits into
HReed1 wants to merge 3 commits into
Conversation
- Replaced versions.yml output + END_VERSIONS heredoc with topic channel emit (versions_hicap) - Cleaned stub block (removed END_VERSIONS heredoc) - Updated tests: sanitizeOutput on both tests - Removed legacy versions output block from meta.yml Contributes to nf-core#4570
SPPearce
requested changes
Apr 30, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Contribution to #4570 — Stub+Topic Channel Migration
Migrates
hicapto the nf-core v4.0.1 topic channel versioning standard. This module already had astub:block but still used the legacyversions.yml/END_VERSIONSpattern.Changes
main.nf: Replacedversions.ymloutput +END_VERSIONSheredoc (in both script and stub) with topic channel emit (versions_hicap). Stub block cleaned up.meta.yml: Removed legacyversions:output block; lint fixed.tests/main.nf.test: AddedsanitizeOutput(process.out)on both tests.tests/main.nf.test.snap: Regenerated snapshots (2 created).Test results (local,
--profile docker,wave)Part of the systematic migration tracked in #4570.