Skip to content

update module: PERBASE#9795

Merged
camlloyd merged 9 commits intonf-core:masterfrom
camlloyd:perbase
Feb 19, 2026
Merged

update module: PERBASE#9795
camlloyd merged 9 commits intonf-core:masterfrom
camlloyd:perbase

Conversation

@camlloyd
Copy link
Member

PR checklist

Closes #9794 by bumping perbase version and using topic channels

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@camlloyd camlloyd changed the title Perbase update module: PERBASE Jan 28, 2026
@SPPearce
Copy link
Contributor

You need to fix the linting, but otherwise looks fine.

@camlloyd camlloyd added this pull request to the merge queue Feb 19, 2026
Merged via the queue into nf-core:master with commit f080e7f Feb 19, 2026
40 checks passed
@camlloyd camlloyd deleted the perbase branch February 19, 2026 14:02
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

update module: PERBASE

4 participants