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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.1k 250

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 486 112

  3. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 416 51

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 398 66

  5. scib scib Public

    Benchmarking analysis of data integration tools

    Python 406 75

  6. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 330 41

Repositories

Showing 10 of 253 repositories
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 330 Apache-2.0 41 30 (1 issue needs help) 3 Updated Feb 5, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 59 BSD-3-Clause 5 7 5 Updated Feb 5, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Feb 5, 2026
  • CellFlow_pheno Public Forked from theislab/CellFlow

    Modeling complex perturbations with CellFlow

    theislab/CellFlow_pheno’s past year of commit activity
    Python 0 19 0 0 Updated Feb 5, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink’s past year of commit activity
    Python 12 Apache-2.0 2 5 3 Updated Feb 4, 2026
  • ehrapy-tutorials Public

    Tutorials for ehrapy

    theislab/ehrapy-tutorials’s past year of commit activity
    Jupyter Notebook 9 Apache-2.0 2 0 0 Updated Feb 4, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 9 Apache-2.0 5 9 0 Updated Feb 4, 2026
  • huCIRA Public
    theislab/huCIRA’s past year of commit activity
    Python 29 MIT 3 3 1 Updated Feb 3, 2026
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 20 MIT 4 0 0 Updated Feb 3, 2026
  • imseq-analysis Public

    Collaboration of Theis lab with MPG on im-seq assay (brightfield imaging and transcriptomics)

    theislab/imseq-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 3, 2026
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