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    • utag

      Public
      Python
      GNU General Public License v3.0
      124305Updated Apr 13, 2026Apr 13, 2026
    • imc

      Public
      A package for the analysis of Imaging Mass Cytometry data
      Python
      61581Updated Mar 25, 2026Mar 25, 2026
    • ggo-imc

      Public
      Jupyter Notebook
      0000Updated Mar 14, 2026Mar 14, 2026
    • Python
      0102Updated Mar 26, 2024Mar 26, 2024
    • utuc-imc

      Public
      Python
      0000Updated Nov 30, 2023Nov 30, 2023
    • Python
      0100Updated Jan 23, 2023Jan 23, 2023
    • Python
      0100Updated Sep 9, 2022Sep 9, 2022
    • msuc-imc

      Public
      Python
      0000Updated Apr 17, 2022Apr 17, 2022
    • Python
      0000Updated Apr 17, 2022Apr 17, 2022
    • covid-metabolomics

      Public archive
      Python
      0100Updated Sep 9, 2021Sep 9, 2021
    • covid-flowcyto

      Public archive
      COVID19 profiling of peripheral immune system with flow cytometry
      Python
      0600Updated Jul 2, 2021Jul 2, 2021
    • covid-imc

      Public
      COVID19 profiling of lung tissue with imaging mass cytometry (IMC)
      Python
      31120Updated Mar 29, 2021Mar 29, 2021
    • Daemon manager of IMC data transfered over Box.com
      Python
      0000Updated Dec 7, 2020Dec 7, 2020
    • A comprehensive framework for the analysis of ChIP-seq data
      C
      GNU General Public License v3.0
      0510Updated Nov 25, 2020Nov 25, 2020
    • scTCRseq

      Public
      Processing of single cell RNAseq data for the recovery of TCRs in python
      Python
      GNU Affero General Public License v3.0
      43010Updated Nov 25, 2020Nov 25, 2020
    • Imaging mass cytometry pipeline based on ilastik and CellProfiler
      Python
      1200Updated Oct 7, 2020Oct 7, 2020
    • atacflow

      Public
      Analysis pipeline for ATACseq data using Nextflow
      Python
      5000Updated Jul 14, 2019Jul 14, 2019
    • TCRVseq

      Public
      Determine T cell receptor (TCR) variable sequence genes from bulk RNAseq data
      Python
      GNU Affero General Public License v3.0
      0300Updated Dec 6, 2017Dec 6, 2017
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