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    18 repositories

    • utag

      Public
      Python
      •
      GNU General Public License v3.0
      •12•43•0•5•Updated Apr 13, 2026Apr 13, 2026

    • imc

      Public
      A package for the analysis of Imaging Mass Cytometry data
      Python
      •6•15•8•1•Updated Mar 25, 2026Mar 25, 2026

    • ggo-imc

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 14, 2026Mar 14, 2026

    • covid-imc-viz

      Public
      Python
      •0•1•0•2•Updated Mar 26, 2024Mar 26, 2024

    • utuc-imc

      Public
      Python
      •0•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • post-covid-imc

      Public
      Python
      •0•1•0•0•Updated Jan 23, 2023Jan 23, 2023

    • covid-pdcs

      Public
      Python
      •0•1•0•0•Updated Sep 9, 2022Sep 9, 2022

    • msuc-imc

      Public
      Python
      •0•0•0•0•Updated Apr 17, 2022Apr 17, 2022

    • covid-placenta

      Public
      Python
      •0•0•0•0•Updated Apr 17, 2022Apr 17, 2022

    • covid-metabolomics

      Public archive
      Python
      •0•1•0•0•Updated Sep 9, 2021Sep 9, 2021

    • covid-flowcyto

      Public archive
      COVID19 profiling of peripheral immune system with flow cytometry
      Python
      •0•6•0•0•Updated Jul 2, 2021Jul 2, 2021

    • covid-imc

      Public
      COVID19 profiling of lung tissue with imaging mass cytometry (IMC)
      Python
      •3•11•2•0•Updated Mar 29, 2021Mar 29, 2021

    • imctransfer

      Public
      Daemon manager of IMC data transfered over Box.com
      Python
      •0•0•0•0•Updated Dec 7, 2020Dec 7, 2020

    • ChIPseeqer

      Public
      A comprehensive framework for the analysis of ChIP-seq data
      chip-seq
      chip-seq
      C
      •
      GNU General Public License v3.0
      •0•5•1•0•Updated Nov 25, 2020Nov 25, 2020

    • scTCRseq

      Public
      Processing of single cell RNAseq data for the recovery of TCRs in python
      pythonrna-seqsingle-cell-rna-seq
      pythonrna-seqsingle-cell-rna-seq
      Python
      •
      GNU Affero General Public License v3.0
      •4•30•1•0•Updated Nov 25, 2020Nov 25, 2020

    • imcpipeline

      Public
      Imaging mass cytometry pipeline based on ilastik and CellProfiler
      Python
      •1•2•0•0•Updated Oct 7, 2020Oct 7, 2020

    • atacflow

      Public
      Analysis pipeline for ATACseq data using Nextflow
      Python
      •5•0•0•0•Updated Jul 14, 2019Jul 14, 2019

    • TCRVseq

      Public
      Determine T cell receptor (TCR) variable sequence genes from bulk RNAseq data
      Python
      •
      GNU Affero General Public License v3.0
      •0•3•0•0•Updated Dec 6, 2017Dec 6, 2017
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