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Merged
ehrenfeu merged 5 commits into from
Mar 25, 2026
Merged

Update installation instructions for Omero packages #141

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6e879b4
Update installation instructions for Omero packages
rohangirishrao Mar 25, 2026
0cb8747
Remove trailing spaces
rohangirishrao Mar 25, 2026
5ac40fc
Whitespace and plural
ehrenfeu Mar 25, 2026
5a27f92
Correct capitalization of 'OMERO' in README
ehrenfeu Mar 25, 2026
a986a73
Mention OMERO for SciJava install method
ehrenfeu Mar 25, 2026
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17 changes: 14 additions & 3 deletions README.md
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Expand Up @@ -56,13 +56,22 @@ following necessary update sites for this package.
- TrackMate-MorpholibJ

The **`IMCF Uni Basel`** update-site will always provide the latest compatible
combination of *official*`.jar` file to use this package.
combination of *official* `.jar` files to use this package.

### Manual Downloads for OMERO

In addition to the update sites, two manual downloads concerning OMERO are
necessary:

- [simple-omero-client]
- [omero-insight]

### 🏗 Alternative: SciJava Maven Package 👷

💡 **IMPORTANT:** 💡 same as for the *default* installation previously
described, you will need to enable **all Update Sites listed above** in your
Fiji as well when using the method described here!
described, you will need to enable **all Update Sites listed above** (and
obviously the respective OMERO downloads) in your Fiji as well when using the
method described here!

The most up-to-date `.jar` (or any other published version, including
pre-releases) for this package can be always found on the [Scijava Maven
Expand Down Expand Up @@ -122,3 +131,5 @@ correct_and_project(raw_image, out_path, model, "Maximum", ".ics")
[apidocs]: https://imcf.one/apidocs/imcflibs/imcflibs.html
[pdoc]: https://pdoc.dev/
[pypi]: https://pypi.org/project/imcflibs/
[simple-omero-client]: https://github.com/GReD-Clermont/simple-omero-client
[omero-insight]: https://github.com/ome/omero-insight
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