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Analysis classes fail with HOOMD GSD files with a TypeError

Component-Analysis

defect

format-HOOMD

Status: Open.

Bug

#5224 In MDAnalysis/mdanalysis;

· orbeckst opened on Feb 5, 2026

Add guards to index assignment in Universe creation

Component-Core

usability

Status: Open.

Feature

#5223 In MDAnalysis/mdanalysis;

· yuxuanzhuang opened on Feb 4, 2026

Incompatibility of <code>StringIO</code> objects with <code>parallelization</code>

Component-Readers

parallelization

Status: Open.

#5221 In MDAnalysis/mdanalysis;

· talagayev opened on Feb 3, 2026

Framework for Performance Benchmarking in Analysis

Component-Analysis

performance

Status: Open.

Feature

#5211 In MDAnalysis/mdanalysis;

· yuxuanzhuang opened on Jan 18, 2026

CI: Azure_Tests Win timeout occasionally

Status: Open.

#5191 In MDAnalysis/mdanalysis;

· PardhavMaradani opened on Dec 29, 2025

Support per-frame analysis by AnalysisBase-based classes for streamed trajectories

Component-Analysis

enhancement

streaming

Status: Open.

Feature

#5183 In MDAnalysis/mdanalysis;

· PardhavMaradani opened on Dec 22, 2025

Add option for <code>gemmi</code> backend for PDB reading

Component-Readers

Format-PDB

Status: Open.

#5141 In MDAnalysis/mdanalysis;

· marinegor opened on Nov 6, 2025

Incorrect unwrapping for LAMMPS trajectories due to unused image flags for periodic boundary condition

format-LAMMPS

more information neededPlease reply to requests for information or the issue will be closed.Please reply to requests for information or the issue will be closed.

PBC

Status: Open.

#5138 In MDAnalysis/mdanalysis;

· gitsirsha opened on Oct 28, 2025

Several contributions from v2.10.0 are missing from either changelog or authors

Status: Open.

#5136 In MDAnalysis/mdanalysis;

· IAlibay opened on Oct 25, 2025

missing test for LAMMPS DumpReader for ValueError when missing coordinates

format-LAMMPS

help wanted

testing

Status: Open.

#5127 In MDAnalysis/mdanalysis;

· orbeckst opened on Oct 14, 2025

Disable build isolation in pip only cron tests after next release

Status: Open.

#5125 In MDAnalysis/mdanalysis;

· IAlibay opened on Oct 12, 2025

Convert units of trajectory data when constructing a universe

format-LAMMPS

units

Status: Open.

#5115 In MDAnalysis/mdanalysis;

· jkalayan opened on Sep 24, 2025