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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 30 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 28 10

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 17 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 579 repositories
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 17 MIT 13 32 1 Updated Mar 6, 2026
  • ophys-slap2-analysis Public

    Data reduction, preprocessing, and analysis for SLAP2 microscopes

    AllenNeuralDynamics/ophys-slap2-analysis’s past year of commit activity
    Jupyter Notebook 3 2 2 2 Updated Mar 6, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    C# 0 MIT 0 7 2 Updated Mar 6, 2026
  • aind-disrnn-wrapper Public

    Job wrapper for AIND-disRNN project

    AllenNeuralDynamics/aind-disrnn-wrapper’s past year of commit activity
    Python 0 MIT 1 10 2 Updated Mar 6, 2026
  • aind-ophys-nwb Public

    Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)

    AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity
    Jupyter Notebook 1 MIT 0 8 3 Updated Mar 6, 2026
  • AllenNeuralDynamics/prototome-web-ui’s past year of commit activity
    TypeScript 0 0 8 1 Updated Mar 6, 2026
  • aind-hcr-data-loader Public

    Data loading for AIND HCR datasets (v1.0)

    AllenNeuralDynamics/aind-hcr-data-loader’s past year of commit activity
    Jupyter Notebook 0 MIT 0 2 1 Updated Mar 6, 2026
  • AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Mar 6, 2026
  • aind-video-utils Public

    Utilities to work with video files

    AllenNeuralDynamics/aind-video-utils’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 6, 2026
  • AllenNeuralDynamics/Aind.Behavior.DirectedForaging’s past year of commit activity
    C# 0 MIT 0 1 0 Updated Mar 6, 2026