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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 31 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 29 10

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 17 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 581 repositories
  • aind-disrnn-dispatcher Public

    Job dispatcher for AIND-disRNN project

    AllenNeuralDynamics/aind-disrnn-dispatcher’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Mar 12, 2026
  • aind-disrnn-wrapper Public

    Job wrapper for AIND-disRNN project

    AllenNeuralDynamics/aind-disrnn-wrapper’s past year of commit activity
    Python 0 MIT 1 10 2 Updated Mar 12, 2026
  • aind-metadata-viz Public

    Website for public metadata visualization

    AllenNeuralDynamics/aind-metadata-viz’s past year of commit activity
    Python 0 MIT 0 3 1 Updated Mar 12, 2026
  • aind-vr-foraging-primary-data-nwb-packaging Public

    Capsule that packages primary data for VR Foraging task using data contract

    AllenNeuralDynamics/aind-vr-foraging-primary-data-nwb-packaging’s past year of commit activity
    Python 0 MIT 0 2 1 Updated Mar 12, 2026
  • aind-ophys-nwb Public

    Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)

    AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity
    Jupyter Notebook 1 MIT 0 8 3 Updated Mar 12, 2026
  • np-notebooks-launcher Public

    A GUI tool for launching JupyterLab with a filtered, pre-configured version of a Jupyter notebook. Designed for experiment workflows that use the same notebook across different experiment types (e.g. ephys, hab, training).

    AllenNeuralDynamics/np-notebooks-launcher’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 12, 2026
  • aind-metadata-service Public

    REST API to compile metadata from various databases

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 9 0 Updated Mar 12, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    C# 0 MIT 0 6 3 Updated Mar 11, 2026
  • aind-exaspim-data-transformation Public

    A library to convert imaris (ims) files to zarr v3 in the compression step of the aind-data-transfer-service upload process from AIND network to S3 bucket.

    AllenNeuralDynamics/aind-exaspim-data-transformation’s past year of commit activity
    Python 0 MIT 0 0 8 Updated Mar 11, 2026
  • aind-octo-data-loaders Public

    Dataloader for the AIND-OCTO foundational model proyect

    AllenNeuralDynamics/aind-octo-data-loaders’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 11, 2026