pyproject.toml

[project]
name = "fpbase-org"
version = "1.2.0"
description = "Add your description here"
readme = "README.md"
requires-python = ">=3.13"
dependencies = [
    'algoliasearch_django==3.0.0',
    'argon2-cffi>=21.3.0',
    'biopython>=1.83',
    'celery[redis]==5.5.3',
    'django-allauth[socialaccount]>=0.70.0',
    'django-anymail==10.0',
    'django-autocomplete-light>=3.11.0',
    'django-avatar>=8.0.1',
    'django-cors-headers>=4.2.0',
    'django-crispy-forms==1.13.0',                  # NOTE: there's an issue with 1.14 and bootstrap4 forms not having form-control class
    'django-environ>=0.10.0',
    'django-filter>=23.3',
    'django-model-utils>=5.0.0',
    'django-mptt>=0.18.0',
    'django-recaptcha>=3.0.0',
    'django-redis>=6.0.0',
    'django-reversion-compare>=0.19.0',
    'django-reversion>=6.0.0',
    'django>=5.2,<5.3',
    'djangorestframework-csv>=2.1.1',
    'djangorestframework>=3.14.0',
    'dnspython>=2.6.1',
    'drf-spectacular>=0.26.3',
    'google-analytics-data>=0.18.9',
    'google-auth>=2.29.0',
    'graphene-django-optimizer>=0.10.0',
    'graphene-django>=3.2.3',
    'graphene>=3.2.2',
    'habanero>=1.2.3',
    'matplotlib>=3.7.1',
    'numpy>=1.26.3',
    'Pillow>=10.0.0',
    'psycopg2>=2.9.11; platform_system == "Linux"',
    'python-slugify>=8.0.1',
    'redis==5.0.4',
    'sentry-sdk>=2.8',
    "django-storages[boto3]>=1.13.2",
    "django-structlog>=8.1.0",
    "gunicorn>=20.1.0",
    "requests>=2.32.5",
    "scout-apm>=3.4.0",
    "structlog-sentry>=2.1.0",
    "structlog>=24.1.0",
    "whitenoise[brotli]>=6.11.0",
    "django-vite>=3.1.0",
    "crispy-bootstrap5>=0.7",
]


[dependency-groups]
test = [
    "factory-boy>=3.2.0",
    "playwright>=1.55.0",
    "psycopg2-binary>=2.9.11; platform_system == 'Darwin'",
    "pytest-cov>=6.0.0",
    "pytest-django>=4.10.0",
    "pytest-playwright>=0.7.1",
    "pytest-sugar>=1.0.0",
    "pytest-xdist>=3.8.0",
    "pytest>=8.3.4",
    "pixelmatch>=0.3.0",
    "sourcemap>=0.2.1",
]
typing = [
    { include-group = "test" },
    "basedpyright>=1.32.1",
    "celery-types>=0.23.0",
    "django-types>=0.22.0",
    "djangorestframework-stubs>=3.15.2",
]
dev = [
    { include-group = "typing" },
    "django-extensions>=3.2.3",
    "ipython>=8.32.0",
    "pandas>=2.0.3",
    "pdbpp>=0.10.3",
    "prek>=0.2.11",
    "ruff>=0.9.6",
]

# ==== pytest ====
[tool.pytest.ini_options]
minversion = "8.0"
DJANGO_SETTINGS_MODULE = "config.settings.test"
FAIL_INVALID_TEMPLATE_VARS = false
addopts = "--reuse-db --cov-config=pyproject.toml --color=yes"
python_files = ["tests.py", "test_*.py"]
pythonpath = ["backend"]
# Exclude e2e tests by default - run them explicitly with: pytest backend/tests_e2e/
norecursedirs = ["node_modules", "tests_e2e"]
filterwarnings = [
    "error",
    "ignore::ResourceWarning",
    "ignore:.*_after_postgeneration will stop saving.*:DeprecationWarning:factory",
]


# ==== Coverage ====
[tool.coverage.run]
source = ["fpbase", "proteins", "references", "fpseq", "favit"]
omit = ["*/migrations/*", "*/tests/*", "proteins/management/**"]


# ==== ruff ====
[tool.ruff]
src = ["backend/"]
line-length = 99
target-version = "py313"
exclude = ['*/migrations/*', '*/static/CACHE/*', '.venv']
fix = true
unsafe-fixes = true

[tool.ruff.lint]
select = [
    "F",    # Pyflakes
    "E",    # pycodestyle errors
    "W",    # pycodestyle warnings
    "I",    # isort
    "UP",   # pyupgrade
    "YTT",  # flake8-2020
    "B",    # flake8-bugbear
    "ISC",  # string concatenation
    "C4",   # flake8-comprehensions
    "DJ",   # flake8-django
    "RUF",  # Ruff-specific rules
    "LOG",  # flake8-logging
    "G",    # flake8-logging-format
    "TC",   # flake8-type-checking
    "SIM",  # Common simplification rules
    "TID",  # flake8-tidy-imports
    "FURB", # refurb
]
ignore = [
    "B905",   # `zip()` without an explicit `strict=` parameter
    "S101",   # Use of assert detected.
    "RUF012", # Mutable class attributes should be annotated
]
[tool.ruff.lint.per-file-ignores]
"backend/config/settings/*" = ["F405"]

[tool.ruff.lint.flake8-tidy-imports]
ban-relative-imports = "all"

[tool.django-stubs]
django_settings_module = "config.settings.test"

[tool.djlint]

# we're actually using basedpyright
[tool.pyright]
pythonVersion = "3.13"
typeCheckingMode = "standard"
include = ["backend"]
exclude = ["**/migrations", "**/config/settings/"]

# Extra paths for module resolution
extraPaths = ["backend"]
# Type checking settings
strictListInference = true
strictDictionaryInference = true
strictSetInference = true
# Disable noisy checks that don't work well with Django
reportMissingTypeStubs = false
reportUnknownMemberType = false
reportUnknownArgumentType = false
reportUnknownVariableType = false
reportUntypedBaseClass = false
# Django has many dynamically created attributes (reverse relations, etc.)
reportAttributeAccessIssue = false
# Django and third-party libraries often use Optional types
reportOptionalMemberAccess = false
# Django Meta classes override parent Meta
reportIncompatibleVariableOverride = false
# Noisy for Django settings and library calls with incomplete stubs
reportCallIssue = false
reportArgumentType = false
reportIncompatibleMethodOverride = false
reportOperatorIssue = false

[tool.uv]
override-dependencies = ["django-stubs ; sys_platform == 'never'"]