feat(agent): allow variable tool permission modes #31029

Job	Run time
Test and Build / PostgreSQL integration (migrate)	2m 10s
Test and Build / Build App	2m 32s
Test and Build / Lint and Test	2m 38s
Test and Build / PostgreSQL integration (push)	2m 20s
Test and Build / Test (shard 2)	1m 47s
Test and Build / Test (shard 3)	1m 51s
Build AMD64	-1s
Check Docs Changes	-1s
Deploy Trigger.dev (Dev)	0s
Detect Desktop Changes	-1s
Detect Version	-1s
Migrate Dev DB	-1s
Build Dev ECR	0s
Build ARM64 (GHCR Only)	-1s
Check Desktop Signing Secrets	0s
Desktop Prerelease Build	0s
Create Desktop Prerelease	0s
Publish Desktop Prerelease	0s
Prune Desktop Prereleases	-1s
Migrate DB	-1s
Promote Images	-1s
Process Docs	0s
Create GHCR Manifests	0s
Resolve Attestation Subjects	0s
Attest Images	0s
Create GitHub Release	0s
Desktop Release	0s
	13m 9s

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