Open Problems in Single-Cell Analysis
30 packages
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utils/extract_uns_metadataPublished
Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/utils/extract_uns_metadata19.9k -
validation/check_dataset_with_schemaPublished
Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/validation/check_dataset_with_schema1.22k -
common/extract_metadataPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/extract_metadata655 -
datasets/normalization/log_cpPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/log_cp225 -
datasets/processors/pcaPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/pca143 -
datasets/processors/knnPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/knn123 -
datasets/processors/hvgPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/hvg119 -
project/sync_resourcesPublished
Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/project/sync_resources118 -
datasets/normalization/atac_tfidfPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/atac_tfidf116 -
datasets/processors/svdPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/svd116 -
datasets/processors/subsamplePublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/subsample109 -
datasets/normalization/sqrt_cpPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/sqrt_cp108 -
datasets/normalization/l1_sqrtPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/l1_sqrt104 -
datasets/normalization/log_scran_poolingPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/log_scran_pooling104 -
datasets/loaders/zenodo_spatialPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/zenodo_spatial94 -
datasets/normalization/prot_clrPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/prot_clr92 -
datasets/loaders/tenx_visiumPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/tenx_visium91 -
common/check_dataset_schemaPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/check_dataset_schema90 -
denoising/methods/alraPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/denoising/methods/alra85 -
batch_integration/methods/scalex_embedPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scalex_embed82 -
common/process_task_results/generate_qcPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/generate_qc79 -
batch_integration/metrics/kbetPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/kbet79 -
batch_integration/methods/scanorama_embedPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scanorama_embed79 -
predict_modality/methods/simplemlp_trainPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/methods/simplemlp_train79 -
spatially_variable_genes/methods/sparkPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spark76 -
datasets/loaders/zenodo_spatial_slidetagsPublished
Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/zenodo_spatial_slidetags76