Repositories list

• beast3

  Public
  Strong typing and modern build and module infrastructure for BEAST

  Java

  •

  GNU Lesser General Public License v2.1

  •11 fork•44 stars•3636 issues•11 pull request•Updated May 4, 2026May 4, 2026

• CCD

  Public
  Conditional Clade Distribution package for BEAST 2

  Java

  •44 forks•44 stars•00 issues•11 pull request•Updated May 3, 2026May 3, 2026

• CBAN

  Public
  releases of beast2 packaged zip files in a reliable location

  package-managerbeast2

  package-managerbeast2

  JavaScript

  •2222 forks•88 stars•11 issue•00 pull requests•Updated May 3, 2026May 3, 2026

• sampled-ancestors

  Public

  CompEvol/sampled-ancestors’s past year of commit activity
  This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors

  javabayesian-inferencemcmc+ 1

  javabayesian-inferencemcmcbeast2

  Java

  •

  GNU General Public License v3.0

  •1212 forks•88 stars•66 issues•33 pull requests•Updated May 1, 2026May 1, 2026

• morph-models

  Public
  Models for dealing with morphological data

  morphological-databeast2

  morphological-databeast2

  Java

  •

  GNU Lesser General Public License v2.1

  •1010 forks•77 stars•55 issues•11 pull request•Updated May 1, 2026May 1, 2026

• beast-package-skeleton

  Public
  A skeleton beast3 package

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• CoupledMCMC

  Public

  CompEvol/CoupledMCMC’s past year of commit activity
  Adaptive parallel tempering for Beast2

  Java

  •

  GNU General Public License v3.0

  •77 forks•1111 stars•55 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• beast3-migration

  Public
  beast3 migration progress

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• Mascot

  Public
  BEAST2 implementation of the Masco approximation of the structured coalescent with forwards/backwards algorithm for node state calculation

  Java

  •

  GNU General Public License v3.0

  •77 forks•1111 stars•44 issues•33 pull requests•Updated Apr 11, 2026Apr 11, 2026

• beast2lang

  Public
  A declarative statistical modelling language that uses fully-resolved BEAST2 class names

  Java

  •00 forks•11 star•44 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• beast2-site

  Public
  beast2 web development site

  jekyllbeast2

  jekyllbeast2

  HTML

  •88 forks•22 stars•33 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• beast2

  Public

  CompEvol/beast2’s past year of commit activity
  Bayesian Evolutionary Analysis by Sampling Trees

  javaevolutionbeast+ 3

  javaevolutionbeastphylogeneticsbayesian-inferencemcmc

  Java

  •

  GNU Lesser General Public License v2.1

  •8383 forks•274274 stars•197197 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• CCD-Research

  Public
  Information, scripts and data of CCD research papers

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 15, 2026Mar 15, 2026

• TreeESSExtra

  Public
  Probabilistic tree ESS estimators based expected difference of clade frequencies.

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• BeastFX3

  Public
  Dockerfile

  •

  GNU Lesser General Public License v2.1

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 22, 2026Feb 22, 2026

• Waiheke2026

  Public
  The 29th Annual New Zealand Phylogenomics Meeting

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• BeastFX

  Public
  GUIs for BEAST using Java FX to make things more pretty.

  Java

  •

  GNU Lesser General Public License v2.1

  •44 forks•66 stars•2121 issues•11 pull request•Updated Nov 20, 2025Nov 20, 2025

• beastlauncher

  Public
  A general launcher utility for any main that wants to depend on local install of BEAST2 classes

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2025May 1, 2025

• benchmark

  Public
  BEAST benchmarking data

  Perl

  •11 fork•11 star•11 issue•00 pull requests•Updated Jan 5, 2023Jan 5, 2023

• BEAST.app

  Public
  BEAST 2.7 package containing applications

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 25, 2022Oct 25, 2022

• packages

  Public
  Released BEAST 2 packages

  22 forks•00 stars•00 issues•00 pull requests•Updated Aug 11, 2022Aug 11, 2022

• Covid4Island

  Public
  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 21, 2021Jun 21, 2021

• beastshell

  Public
  BeanShell scripting for BEAST2

  Java

  •

  GNU Lesser General Public License v2.1

  •11 fork•00 stars•11 issue•00 pull requests•Updated Mar 22, 2018Mar 22, 2018

• TTBSP

  Public
  Materials for Taming the BEAST in the South Pacific

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 10, 2017Jan 10, 2017

• beast1to2

  Public
  Convert BEAST 1 XML for BEAST 2

  Java

  •00 forks•00 stars•11 issue•00 pull requests•Updated Dec 7, 2016Dec 7, 2016

• testXXX

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2016Dec 4, 2016

• NZGOT

  Public
  The toolkit to analyse various types of data collected from New Zealand Genomic Observatory project

  javabioinformatics

  javabioinformatics

  Java

  •

  GNU General Public License v2.0

  •22 forks•33 stars•00 issues•00 pull requests•Updated Aug 8, 2016Aug 8, 2016

• beast2report

  Public
  Test report

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2016Jun 1, 2016

• VCF2Patterns

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 19, 2016Apr 19, 2016

• phylodynamics

  Public
  For joint inference of genetic and epidemiological parameters. Repository has now moved to:

  00 forks•11 star•00 issues•00 pull requests•Updated Oct 5, 2015Oct 5, 2015