cellmap-models/pyproject.toml at main · janelia-cellmap/cellmap-models · GitHub

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[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools", "wheel"]

[project]
name = "cellmap-models"
description = "Repository of model architectures and network weights used for CellMap segmentations."
readme = "README.md"
requires-python = ">=3.10"
classifiers = [
  "Programming Language :: Python :: 3",
]
keywords = ["machine learning", "deep learning", "cell segmentation", "cellpose", "cellmap"]
license = { text = "BSD 3-Clause License" }
authors = [
    { email = "rhoadesj@hhmi.org", name = "Jeff Rhoades" },
]
version = "0.2.4"
dependencies = [
  'torch',
  'torchvision',
  'numpy',
  'tqdm',
  'ml-collections',
  'pydantic',
  'lazy_loader',
]

[project.optional-dependencies]
dev = [
  'pytest',
  'pytest-cov',
  'pytest-mock',
  'black',
  'mypy',
  'pdoc',
  'pre-commit',
]
cellpose = ['cellpose']
pretrained = ['cellpose[gui]']
dacapo = ["dacapo-ml", "funlib.geometry"]
export = ["onnxruntime"]
huggingface = ["huggingface-hub"]
all = ["cellmap-models[dev,cellpose,pretrained,dacapo,export,huggingface]"]

[project.urls]
homepage = "https://janelia-cellmap.github.io/cellmap-models"
repository = "https://github.com/janelia-cellmap/cellmap-models"

[tool.mypy]
exclude = ['setup*']
ignore_missing_imports = true

[project.scripts]
"cellmap.add_cellpose" = "cellmap_models.pytorch.cellpose:add_model"
"cellmap-export-dacapo" = "cellmap_models.model_export.dacapo_model:cli_export_dacapo_model"