diff --git a/amber/LICENSE-binary-python b/amber/LICENSE-binary-python
index 8f6d6fd744f..872331e54ba 100644
--- a/amber/LICENSE-binary-python
+++ b/amber/LICENSE-binary-python
@@ -218,17 +218,17 @@ Python packages:
   - botocore==1.40.53
   - frozenlist==1.8.0
   - hf-xet==1.5.0
-  - huggingface-hub==0.36.2
+  - huggingface-hub==1.16.1
   - multidict==6.7.1
   - overrides==7.4.0
   - packaging==26.2
-  - propcache==0.4.1
+  - propcache==0.5.2
   - pyarrow==21.0.0
   - pyiceberg==0.11.1
   - pympler==1.1
   - python-dateutil==2.8.2
-  - regex==2026.4.4
-  - requests==2.33.1
+  - regex==2026.5.9
+  - requests==2.34.2
   - s3transfer==0.14.0
   - safetensors==0.7.0
   - tenacity==8.5.0
@@ -236,7 +236,7 @@ Python packages:
   - transformers==5.0.0rc3
   - tzdata==2026.2
   - websocket-client==1.9.0
-  - yarl==1.23.0
+  - yarl==1.24.2
 
 --------------------------------------------------------------------------------
 Dependencies under the MIT License
@@ -255,9 +255,9 @@ Python packages:
   - charset-normalizer==3.4.7
   - deprecated==1.2.14
   - filelock==3.29.0
-  - fonttools==4.62.1
+  - fonttools==4.63.0
   - fs==2.4.16
-  - greenlet==3.5.0
+  - greenlet==3.5.1
   - h11==0.16.0
   - h2==4.3.0
   - hpack==4.1.0
@@ -265,7 +265,7 @@ Python packages:
   - iniconfig==1.1.1
   - jmespath==1.1.0
   - loguru==0.7.0
-  - markdown-it-py==4.1.0
+  - markdown-it-py==4.2.0
   - mdurl==0.1.2
   - mmh3==5.2.1
   - pampy==0.3.0
@@ -291,7 +291,7 @@ Python packages:
   - typer-slim==0.24.0
   - typing-inspection==0.4.2
   - tzlocal==2.1
-  - urllib3==2.6.3
+  - urllib3==2.7.0
   - wordcloud==1.9.3
 
 --------------------------------------------------------------------------------
@@ -300,14 +300,14 @@ Dependencies under the BSD 3-Clause License
 
 Python packages:
   - cached-property==1.5.2
-  - click==8.3.3
+  - click==8.4.1
   - contourpy==1.3.3
   - cycler==0.12.1
   - fsspec==2025.9.0
   - grpclib==0.4.9
   - httpcore==1.0.9
   - httpx==0.28.1
-  - idna==3.13
+  - idna==3.16
   - jinja2==3.1.6
   - joblib==1.5.3
   - kiwisolver==1.5.0
@@ -326,7 +326,7 @@ Python packages:
   - scipy==1.17.1
   - sympy==1.14.0
   - threadpoolctl==3.6.0
-  - tifffile==2026.5.2
+  - tifffile==2026.5.15
   - torch==2.8.0
   - zstandard==0.25.0
 
@@ -356,7 +356,7 @@ Dependencies under the Mozilla Public License, Version 2.0
 
 Python packages:
   - bidict==0.22.0
-  - certifi==2026.4.22
+  - certifi==2026.5.20
   - tqdm==4.67.3
 
 --------------------------------------------------------------------------------
@@ -364,7 +364,7 @@ Dependencies under the Python Software Foundation License
 --------------------------------------------------------------------------------
 
 Python packages:
-  - aiohappyeyeballs==2.6.1
+  - aiohappyeyeballs==2.6.2
   - matplotlib==3.10.9
   - typing-extensions==4.14.1