MDAnalysis maintains a collection of Jupyter notebooks as examples of what the code can do. Each notebook can be downloaded from `GitHub`_ to run on your own computer, or viewed as an online tutorial on the user guide. You can also interact with each notebook on `Binder`_.
.. toctree:: :maxdepth: 1 :caption: General quickstart constructing_universe transformations/README other/README
.. toctree:: :maxdepth: 2 :caption: Analysis analysis/alignment_and_rms/README analysis/distances_and_contacts/README analysis/trajectory_similarity/README analysis/structure/README analysis/reduced_dimensions/README analysis/polymers_and_membranes/README analysis/volumetric/README