modelseed-api/docker-compose.yml at main · ModelSEED/modelseed-api · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
services:
  api:
    build:
      context: ..
      dockerfile: modelseed-api/Dockerfile
    container_name: modelseed-api-api-1
    ports:
      - "3004:8000"
    volumes:
      - modelseed-jobs:/tmp/modelseed-jobs
    environment:
      MODELSEED_USE_CELERY: "true"
      MODELSEED_CELERY_BROKER_URL: "redis://bioseed_redis:6379/10"
      MODELSEED_CELERY_RESULT_BACKEND: "redis://bioseed_redis:6379/10"
    restart: unless-stopped
    networks:
      - default
      - bioseed_network
    healthcheck:
      test: ["CMD", "python", "-c", "import urllib.request; urllib.request.urlopen('http://localhost:8000/api/health')"]
      interval: 60s
      timeout: 10s
      retries: 3
      start_period: 30s

  worker:
    build:
      context: ..
      dockerfile: modelseed-api/Dockerfile
    container_name: celery_modelseed
    command: ["python", "-m", "modelseed_api.jobs.celery_app"]
    volumes:
      - modelseed-jobs:/tmp/modelseed-jobs
    environment:
      MODELSEED_USE_CELERY: "true"
      MODELSEED_CELERY_BROKER_URL: "redis://bioseed_redis:6379/10"
      MODELSEED_CELERY_RESULT_BACKEND: "redis://bioseed_redis:6379/10"
    restart: unless-stopped
    # Give a long-running task (reconstruct + gapfill ~6-10 min, FBA ~10 s)
    # time to finish on SIGTERM before docker SIGKILLs.  Without this,
    # Celery's prefork pool gets killed mid-LP-solve and acks_late can't
    # reliably requeue (Layer D test finding, 2026-05-04).
    stop_grace_period: 15m
    networks:
      - default
      - bioseed_network
    depends_on:
      - api

networks:
  default:
    driver: bridge
  bioseed_network:
    external: true

volumes:
  modelseed-jobs: