Release v0.2.0, common name strategy update (#26)

* Deterministic common names, English prioritized; get names for higher ranks as well;  convert common names tooling to Polars

* Modularize helper functions

* Test common name functionality

* Run tests with Actions workflow

* Address issues identified running on real data

* Dry code; sync tests

* Set v0.2.0 release metadata

Author: thompsonmj

.github/workflows/run-tests.yaml

@@ -0,0 +1,33 @@
+name: run-tests
+
+on:
+  pull_request:
+  push:
+
+jobs:
+  run-tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }} 
+
+      - name: install dependencies
+        run: pip install .[dev]
+        shell: bash
+
+      - name: run Ruff linter
+        run: ruff check .
+        shell: bash
+
+      - name: run test
+        run: pytest -rs
+        shell: bash

.zenodo.json

@@ -0,0 +1,40 @@
+{
+  "creators": [
+    {
+      "name": "Thompson, Matthew J.",
+      "orcid": "0000-0003-0583-8585"
+    },
+    {
+      "name": "Campolongo, Elizabeth G.",
+      "orcid": "0000-0003-0846-2413"
+    },
+    {
+      "name": "Lapp, Hilmar",
+      "orcid": "0000-0001-9107-0714"
+    },
+    {
+      "name": "Gu, Jianyang",
+      "orcid": "0000-0002-4060-7427"
+    }
+  ],
+  "description": "A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier.",
+  "keywords": [
+    "imageomics",
+    "taxonomy",
+    "taxonomic resolution",
+    "tree of life",
+    "alignment",
+    "hierarchy"
+  ],
+  "license": {
+    "id": "MIT"
+  },
+  "publication_date": "2026-02-12",
+  "title": "TaxonoPy",
+  "version": "0.2.0",
+  "grants": [
+    {
+      "id": "021nxhr62::2118240"
+    }
+  ]
+}

CITATION.cff

@@ -6,15 +6,21 @@ authors:
 - family-names: "Campolongo"
   given-names: "Elizabeth G."
   orcid: "https://orcid.org/0000-0003-0846-2413"
+- family-names: "Lapp"
+  given-names: "Hilmar"
+  orcid: "https://orcid.org/0000-0001-9107-0714"
+- family-names: "Gu"
+  given-names: "Jianyang"
+  orcid: "https://orcid.org/0000-0002-4060-7427"
 cff-version: 1.2.0
-date-released: "2025-05-23"
+date-released: "2026-02-12"
 identifiers:
-  - description: "The GitHub release URL of tag v0.1.0-beta."
+  - description: "The GitHub release URL of tag v0.2.0."
     type: url
-    value: "https://github.com/Imageomics/TaxonoPy/releases/tag/v0.1.0-beta"
-  - description: "The GitHub URL of the commit tagged with v0.1.0-beta"
+    value: "https://github.com/Imageomics/TaxonoPy/releases/tag/v0.2.0"
+  - description: "The GitHub URL of the commit tagged with v0.2.0"
     type: url
-    value: "https://github.com/Imageomics/TaxonoPy/tree/b3ddeb8eb05d09c15c417ce2d2a4354a2a6fa49d"
+    value: "https://github.com/Imageomics/TaxonoPy/tree/<update-after-release>"
 keywords:
   - imageomics
   - taxonomy
@@ -25,19 +31,19 @@ keywords:
 references:
   - type: software
     title: "GNverifier -- a reconciler and resolver of scientific names against more than 100 data sources."
-    version: "v1.2.2"
+    version: "v1.2.5"
     authors:
       - family-names: "Mozzherin"
         given-names: "Dmitry"
         orcid: "https://orcid.org/0000-0003-1593-1417"
     repository-code: "https://github.com/gnames/gnverifier"
-    date-released: "2024-11-04"
-    doi: 10.5281/zenodo.10070488
+    date-released: "2025-04-02"
+    doi: 10.5281/zenodo.5111542
     license: MIT
 license: MIT
 message: "If you use this software, please cite it using the metadata from this file."
 repository-code: "https://github.com/Imageomics/TaxonoPy"
 title: "TaxonoPy"
-version: "0.1.0-beta"
+version: "0.2.0"
 doi: "10.5281/zenodo.15499454"
 type: software

src/taxonopy/__init__.py

@@ -5,7 +5,7 @@
 the TreeOfLife (TOL) dataset.
 """
 
-__version__ = "0.1.0b0"
+__version__ = "0.2.0"
 
 from taxonopy.types.data_classes import (
     ResolutionStatus,